High Performance Software
"Amber" refers to two things: a set of molecular mechanical force fields for the simulation of biomolecules (which are in the public domain, and are used in a variety of simulation programs); and a package of molecular simulation programs which includes source code and demos. The current version of the code is Amber version 10, which is distributed by University of California San Francisco.
Sander is the main program used to invoke other programs in Amber. To submit an amber job into batch queues, use command:
submit_sander [options and names for input and output]
For information on supported platforms, versions and licenses, please
check the AFRL DSRC Software Page: